Current
- 845 St. Joey Way, Port St. Joe, Florida - (opened April 5, 1957) - First Whataburger restaurant in Florida.
- US-98 Panama City Beach, Florida - (opened April 3, 1974) - Has a fenced in playground and outdoor dinning area.
- Mexicana Outlets, Mexico Beach, FL - (opened March 16, 1990) - Located in the food court.
Former
- Paradise Path, Mexico Beach, FL - (opened May 7, 1978) - Closed in 1990, now a Fuddrucker's restaurant.